ENCFF000JQE

Library Details

Organism: Homo Sapiens
Biosample: IMR-90 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSE
Description: Part of ENCODE experiment ENCSR000CSE. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, IMR-90. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 10.00 12.66 10.71 100.0 C19orf48P-203 retained intron IMR-90 (Cell line)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1865.00 80.32 1998.28 100.0 NOP56-219 retained intron IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 2.18 0.17 2.34 72.58 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 47.00 3.63 50.36 100.0 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 24.00 1.85 25.72 47.06 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2.40 0.19 2.57 80.1 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 26.95 2.08 28.88 69.09 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 7.76 0.60 8.31 29.86 U2.3-201 snRNA IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 3.00 0.13 3.21 100.0 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 343.00 14.38 367.51 95.01 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 15.00 0.63 16.07 100.0 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 1033.00 43.31 1106.82 84.33 GAS5-230 retained intron IMR-90 (Cell line)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1413.00 79.43 1513.98 100.0 ENST00000651540 lncRNA IMR-90 (Cell line)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 1196.00 34.35 1281.47 99.01 SNHG29-232 lncRNA IMR-90 (Cell line)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 1909.00 54.82 2045.42 93.62 SNHG29-232 lncRNA IMR-90 (Cell line)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 25.00 0.72 26.79 100.0 SNHG29-232 lncRNA IMR-90 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 56.00 24.24 60.00 100.0 SNHG1-248 lncRNA IMR-90 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 32.00 13.85 34.29 100.0 SNHG1-248 lncRNA IMR-90 (Cell line)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 1.00 0.43 1.07 100.0 SNHG1-248 lncRNA IMR-90 (Cell line)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 97.00 41.99 103.93 100.0 SNHG1-248 lncRNA IMR-90 (Cell line)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1157.00 68.75 1239.68 100.0 SNHG5-273 lncRNA IMR-90 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 198.00 11.76 212.15 93.84 SNHG5-273 lncRNA IMR-90 (Cell line)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 59.00 3.51 63.22 89.39 SNHG5-273 lncRNA IMR-90 (Cell line)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 20.00 100.00 21.43 100.0 SNHG14-336 lncRNA IMR-90 (Cell line)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 158.00 69.91 169.29 100.0 NCL-216 retained intron IMR-90 (Cell line)