ENCFF000JQE

Library Details

Organism: Homo Sapiens
Biosample: IMR-90 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CSE
Description: Part of ENCODE experiment ENCSR000CSE. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, IMR-90. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 67.00 18.66 71.79 58.26 RNU5A-1-201 snRNA IMR-90 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 43.04 11.99 46.12 32.6 RNU5A-1-201 snRNA IMR-90 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 23.15 6.45 24.80 31.71 RNU5A-1-201 snRNA IMR-90 (Cell line)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 11.00 8.66 11.79 100.0 SNORD12B-201 snoRNA IMR-90 (Cell line)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 63.00 49.61 67.50 100.0 SNORD12B-201 snoRNA IMR-90 (Cell line)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 4684.00 94.11 5018.73 100.0 SNHG3-202 retained intron IMR-90 (Cell line)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 158.00 70.85 169.29 100.0 SNORD124-201 snoRNA IMR-90 (Cell line)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2.00 50.00 2.14 100.0 RPL3-212 retained intron IMR-90 (Cell line)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 9.00 0.24 9.64 100.0 RPL13A-212 retained intron IMR-90 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 3436.00 93.37 3681.55 100.0 RPL13A-212 retained intron IMR-90 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 351.00 43.39 376.08 100.0 RPL7A-207 protein coding CDS not defined IMR-90 (Cell line)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 357.00 44.13 382.51 100.0 RPL7A-207 protein coding CDS not defined IMR-90 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 140.00 71.07 150.00 100.0 RABGGTB-213 protein coding CDS not defined IMR-90 (Cell line)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 10.00 5.08 10.71 100.0 RABGGTB-213 protein coding CDS not defined IMR-90 (Cell line)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 3881.00 97.71 4158.35 99.44 RPL5-205 retained intron IMR-90 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 15.00 0.38 16.07 100.0 RPL5-205 retained intron IMR-90 (Cell line)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 1674.00 88.20 1793.63 100.0 RACK1-230 retained intron IMR-90 (Cell line)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 1.00 1.89 1.07 100.0 SNHG6-204 retained intron IMR-90 (Cell line)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 50.00 94.34 53.57 100.0 SNHG6-204 retained intron IMR-90 (Cell line)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 19.00 79.17 20.36 100.0 HSPA8-211 retained intron IMR-90 (Cell line)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 4865.00 89.17 5212.67 100.0 RPS13-208 retained intron IMR-90 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 12.00 100.00 12.86 100.0 HSPA8-215 retained intron IMR-90 (Cell line)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 19.00 42.22 20.36 100.0 RPL4-214 retained intron IMR-90 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 26.00 5.92 27.86 100.0 ENST00000570843 lncRNA IMR-90 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 92.00 20.96 98.57 100.0 ENST00000570843 lncRNA IMR-90 (Cell line)