ENCFF000JOR

Library Details

Organism: Homo Sapiens
Biosample: subcutaneous preadipocyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVJ
Description: Part of ENCODE experiment ENCSR000CVJ. The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 1432.00 82.30 24.31 100.0 SNHG14-336 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 5644.00 63.01 95.82 100.0 NCL-216 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 8234.67 47.82 139.80 69.74 SNHG19-202 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 3474.12 20.18 58.98 33.66 SNHG19-202 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 2440.00 41.29 41.42 100.0 SNHG8-214 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 1720.00 62.84 29.20 100.0 ENST00000722183 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 14706.00 83.80 249.66 100.0 ENST00000747512 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 1.00 1.92 0.02 100.0 ENST00000747675 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 7.00 0.02 0.12 100.0 ENST00000772672 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 31746.00 91.23 538.95 100.0 ENST00000772672 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 7.00 1.05 0.12 16.67 ENST00000788343 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 3.00 0.05 0.05 100.0 ENST00000823279 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 75.00 1.34 1.27 5.4 ENST00000823279 lncRNA subcutaneous preadipocyte (Primary cell)