ENCFF000JOR

Library Details

Organism: Homo Sapiens
Biosample: subcutaneous preadipocyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVJ
Description: Part of ENCODE experiment ENCSR000CVJ. The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 72.89 0.55 1.24 65.67 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 29.55 0.22 0.50 53.73 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 21.74 0.16 0.37 55.73 U2.3-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 76.00 8.17 1.29 100.0 SNHG14-224 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1.00 0.00 0.02 100.0 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 8554.00 0.44 145.22 100.0 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 781715.00 40.24 13271.03 95.44 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.02 100.0 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 1828.00 0.09 31.03 100.0 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 650994.00 33.51 11051.81 70.73 GAS5-230 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 3.00 0.05 0.05 100.0 ENST00000651540 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 4344.00 75.14 73.75 100.0 ENST00000651540 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 30256.00 1.66 513.65 98.14 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 1691140.00 92.57 28710.18 96.62 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 10225.00 0.56 173.59 100.0 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 3.00 0.00 0.05 100.0 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 3396.00 0.19 57.65 100.0 SNHG29-232 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1.00 0.61 0.02 100.0 SNHG14-234 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 8494.00 27.53 144.20 100.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 1836.00 5.95 31.17 100.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 1.00 0.00 0.02 100.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 9671.00 31.34 164.18 100.0 SNHG1-248 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 2126.00 3.66 36.09 100.0 SNHG5-273 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 13049.00 22.46 221.53 72.53 SNHG5-273 lncRNA subcutaneous preadipocyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 30637.00 52.73 520.12 91.09 SNHG5-273 lncRNA subcutaneous preadipocyte (Primary cell)