ENCFF000JOR

Library Details

Organism: Homo Sapiens
Biosample: subcutaneous preadipocyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVJ
Description: Part of ENCODE experiment ENCSR000CVJ. The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 1.00 100.00 0.02 100.0 MIR29A-201 miRNA subcutaneous preadipocyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 43.00 9.05 0.73 84.31 RNU5A-1-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 54.56 11.49 0.93 40.41 RNU5A-1-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 89.85 18.92 1.53 57.6 RNU5A-1-201 snRNA subcutaneous preadipocyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 28.00 0.85 0.48 100.0 7SK.1-201 misc RNA subcutaneous preadipocyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 1067.00 32.30 18.11 100.0 7SK.1-201 misc RNA subcutaneous preadipocyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 34.00 0.76 0.58 94.44 SNORD83A-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 22.00 0.49 0.37 100.0 SNORD83A-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 2.00 0.10 0.03 100.0 SNORD90-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 2026.00 12.84 34.40 100.0 SNORD12B-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 10356.00 65.62 175.81 100.0 SNORD12B-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 0.38 0.02 100.0 SNORD62B-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 33352.00 90.67 566.21 100.0 SNHG3-202 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 1.00 0.32 0.02 100.0 SNORD127-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1.00 100.00 0.02 100.0 SNORD126-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 5290.00 74.38 89.81 100.0 SNORD124-201 snoRNA subcutaneous preadipocyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2664.00 43.30 45.23 55.66 RPL3-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 3.00 0.05 0.05 100.0 RPL3-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 32.00 0.52 0.54 100.0 RPL3-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 859.00 1.56 14.58 100.0 RPL13A-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1.00 0.00 0.02 100.0 RPL13A-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 46399.00 84.18 787.71 100.0 RPL13A-212 retained intron subcutaneous preadipocyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 31242.00 70.86 530.39 100.0 RPL7A-207 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 7678.00 17.42 130.35 100.0 RPL7A-207 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 11.00 0.10 0.19 100.0 RABGGTB-213 protein coding CDS not defined subcutaneous preadipocyte (Primary cell)