ENCFF000JNS

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of villous mesenchyme (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUX
Description: Part of ENCODE experiment ENCSR000CUX. The libraries contained in this experiment come from the villious placenta fibroblast primary whole cells, HVMF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 385.00 0.25 75.96 100.0 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 2.63 0.20 100.0 SNHG14-234 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1159.00 27.96 228.68 100.0 SNHG1-248 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 95.00 2.29 18.74 100.0 SNHG1-248 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 1429.00 34.48 281.95 100.0 SNHG1-248 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 121.00 2.54 23.87 100.0 SNHG5-273 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 856.00 17.95 168.89 63.93 SNHG5-273 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 2718.00 56.98 536.27 89.97 SNHG5-273 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 188.00 88.68 37.09 100.0 SNHG14-336 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 569.00 62.73 112.27 100.0 NCL-216 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1693.18 49.31 334.07 71.05 SNHG19-202 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 718.31 20.92 141.73 36.06 SNHG19-202 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 165.00 38.19 32.56 100.0 SNHG8-214 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 118.00 49.17 23.28 100.0 ENST00000722183 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 1.00 50.00 0.20 100.0 ENST00000747512 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 6.00 0.13 1.18 100.0 ENST00000772672 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 4313.00 90.88 850.98 100.0 ENST00000772672 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 7.00 1.82 1.38 12.07 ENST00000823279 lncRNA fibroblast of villous mesenchyme (Primary cell)