ENCFF000JNS

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of villous mesenchyme (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUX
Description: Part of ENCODE experiment ENCSR000CUX. The libraries contained in this experiment come from the villious placenta fibroblast primary whole cells, HVMF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 6550.00 91.02 1292.35 100.0 SNHG6-204 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 3.00 1.65 0.59 100.0 WDR74-204 protein coding fibroblast of villous mesenchyme (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 1084.00 56.84 213.88 67.12 HSPA8-211 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 277.00 80.99 54.65 100.0 RPS13-208 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 583.00 90.11 115.03 100.0 HSPA8-215 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 360.00 69.23 71.03 100.0 RPL4-214 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 10.00 7.25 1.97 100.0 ENST00000570843 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 69.00 50.00 13.61 100.0 ENST00000570843 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 248.00 65.96 48.93 100.0 C19orf48P-203 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 19.00 13.01 3.75 100.0 RPS11-206 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 171.00 35.48 33.74 100.0 NOP56-219 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1.00 50.00 0.20 100.0 RNA5-8SN2-201 rRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 3.63 0.20 0.72 25.92 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 938.00 52.31 185.07 100.0 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 8.81 0.49 1.74 62.94 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 0.78 0.04 0.15 77.63 U2.3-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 2.00 1.72 0.39 100.0 SNHG14-224 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 612.00 0.38 120.75 100.0 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 58833.00 37.01 11608.03 94.82 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 235.00 0.15 46.37 100.0 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 58550.00 36.83 11552.19 74.85 GAS5-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1021.00 74.25 201.45 100.0 ENST00000651540 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 9675.00 6.26 1908.92 96.35 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 131616.00 85.18 25968.47 94.19 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 593.00 0.38 117.00 100.0 SNHG29-232 lncRNA fibroblast of villous mesenchyme (Primary cell)