ENCFF000JNS

Library Details

Organism: Homo Sapiens
Biosample: fibroblast of villous mesenchyme (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUX
Description: Part of ENCODE experiment ENCSR000CUX. The libraries contained in this experiment come from the villious placenta fibroblast primary whole cells, HVMF isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 3.00 7.14 0.59 75.0 RNU5A-1-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 3.78 8.99 0.75 62.92 RNU5A-1-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 3.31 7.87 0.65 55.11 RNU5A-1-201 snRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 1.00 0.67 0.20 100.0 7SK.1-201 misc RNA fibroblast of villous mesenchyme (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 51.00 34.00 10.06 100.0 7SK.1-201 misc RNA fibroblast of villous mesenchyme (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 4.00 0.81 0.79 100.0 SNORD83A-201 snoRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 1.00 0.31 0.20 100.0 SNORD90-201 snoRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 142.00 10.56 28.02 100.0 SNORD12B-201 snoRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 898.00 66.77 177.18 100.0 SNORD12B-201 snoRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1.00 3.03 0.20 100.0 SNORD62B-201 snoRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 2852.00 89.01 562.71 100.0 SNHG3-202 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 793.00 66.25 156.46 100.0 SNORD124-201 snoRNA fibroblast of villous mesenchyme (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 2.00 0.09 0.39 100.0 RPL3-212 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 1479.00 69.11 291.81 83.94 RPL3-212 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 114.00 1.88 22.49 100.0 RPL13A-212 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 4944.00 81.41 975.47 100.0 RPL13A-212 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 702.00 10.80 138.51 100.0 RPL7A-207 protein coding CDS not defined fibroblast of villous mesenchyme (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 5014.00 77.10 989.29 100.0 RPL7A-207 protein coding CDS not defined fibroblast of villous mesenchyme (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1798.00 53.01 354.75 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of villous mesenchyme (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 382.00 11.26 75.37 100.0 RABGGTB-213 protein coding CDS not defined fibroblast of villous mesenchyme (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 4.00 0.12 0.79 80.0 RABGGTB-213 protein coding CDS not defined fibroblast of villous mesenchyme (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 76093.00 98.48 15013.51 99.43 RPL5-205 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 8.00 0.01 1.58 100.0 RPL5-205 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 3.00 0.48 0.59 100.0 RACK1-230 retained intron fibroblast of villous mesenchyme (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 159.00 2.21 31.37 100.0 SNHG6-204 retained intron fibroblast of villous mesenchyme (Primary cell)