ENCFF000JNF

Library Details

Organism: Homo Sapiens
Biosample: vein endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVI
Description: Part of ENCODE experiment ENCSR000CVI. The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 43400.00 87.87 1274.02 100.0 SNHG6-204 retained intron vein endothelial cell (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 11.00 0.67 0.32 91.67 WDR74-204 protein coding vein endothelial cell (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 4184.00 51.78 122.82 60.44 HSPA8-211 retained intron vein endothelial cell (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2075.00 81.05 60.91 100.0 RPS13-208 retained intron vein endothelial cell (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 7368.00 82.85 216.29 100.0 HSPA8-215 retained intron vein endothelial cell (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1977.00 69.86 58.04 100.0 RPL4-214 retained intron vein endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 905.00 14.08 26.57 100.0 ENST00000570843 lncRNA vein endothelial cell (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 3962.00 61.64 116.31 100.0 ENST00000570843 lncRNA vein endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.03 0.03 31.72 C19orf48P-203 retained intron vein endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.03 0.03 86.48 C19orf48P-203 retained intron vein endothelial cell (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 2151.00 70.80 63.14 100.0 C19orf48P-203 retained intron vein endothelial cell (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 179.00 13.83 5.25 100.0 RPS11-206 retained intron vein endothelial cell (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3.00 0.23 0.09 100.0 ENST00000602478 lncRNA vein endothelial cell (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 3806.00 58.40 111.73 100.0 NOP56-219 retained intron vein endothelial cell (Primary cell)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1.00 14.29 0.03 100.0 RNA5-8SN2-201 rRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 73.30 0.59 2.15 42.87 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 3.00 0.02 0.09 75.0 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 5910.00 47.37 173.49 100.0 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 27.00 0.22 0.79 50.0 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 103.33 0.83 3.03 60.43 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 26.95 0.22 0.79 59.88 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 17.08 0.14 0.50 56.93 U2.3-201 snRNA vein endothelial cell (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 25.00 4.23 0.73 100.0 SNHG14-224 lncRNA vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 3294.00 0.32 96.70 100.0 GAS5-230 retained intron vein endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 322930.00 31.34 9479.70 94.7 GAS5-230 retained intron vein endothelial cell (Primary cell)