ENCFF000JNF

Library Details

Organism: Homo Sapiens
Biosample: vein endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVI
Description: Part of ENCODE experiment ENCSR000CVI. The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 53.00 11.62 1.56 80.3 RNU5A-1-201 snRNA vein endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 78.52 17.22 2.30 51.66 RNU5A-1-201 snRNA vein endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 78.53 17.22 2.31 62.83 RNU5A-1-201 snRNA vein endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 8.00 0.53 0.23 100.0 7SK.1-201 misc RNA vein endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 380.00 25.15 11.16 100.0 7SK.1-201 misc RNA vein endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 5.00 0.19 0.15 100.0 SNORD83A-201 snoRNA vein endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 20.00 0.75 0.59 100.0 SNORD83A-201 snoRNA vein endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 2386.00 17.20 70.04 100.0 SNORD12B-201 snoRNA vein endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 8627.00 62.19 253.25 100.0 SNORD12B-201 snoRNA vein endothelial cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 19135.00 87.92 561.71 100.0 SNHG3-202 retained intron vein endothelial cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 8233.00 76.61 241.68 100.0 SNORD124-201 snoRNA vein endothelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 11624.00 73.45 341.23 86.57 RPL3-212 retained intron vein endothelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 8.00 0.05 0.23 100.0 RPL3-212 retained intron vein endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 1.00 0.00 0.03 100.0 RPL13A-212 retained intron vein endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 23626.00 38.53 693.55 100.0 RPL13A-212 retained intron vein endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 24780.00 40.41 727.42 100.0 RPL13A-212 retained intron vein endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 4823.00 24.99 141.58 100.0 RPL7A-207 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 11955.00 61.95 350.94 100.0 RPL7A-207 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 6844.00 46.62 200.91 100.0 RABGGTB-213 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1864.00 12.70 54.72 100.0 RABGGTB-213 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 6.00 0.04 0.18 100.0 RABGGTB-213 protein coding CDS not defined vein endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 402674.00 98.66 11820.61 99.6 RPL5-205 retained intron vein endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 57.00 0.01 1.67 100.0 RPL5-205 retained intron vein endothelial cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 85.00 1.60 2.50 100.0 RACK1-230 retained intron vein endothelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 2844.00 5.76 83.49 100.0 SNHG6-204 retained intron vein endothelial cell (Primary cell)