ENCFF000JLV

Library Details

Organism: Homo Sapiens
Biosample: placental pericyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVG
Description: Part of ENCODE experiment ENCSR000CVG. The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 114.54 0.62 2.42 63.64 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 97.35 0.52 2.06 52.62 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 61.33 0.33 1.30 51.11 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 124.00 5.77 2.62 100.0 SNHG14-224 lncRNA placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 3943.00 0.29 83.30 100.0 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 547410.00 40.86 11564.07 95.26 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 2.00 0.00 0.04 100.0 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 2159.00 0.16 45.61 100.0 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 444475.00 33.18 9389.56 73.67 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1.00 0.02 0.02 100.0 ENST00000651540 lncRNA placental pericyte (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 3457.00 73.41 73.03 100.0 ENST00000651540 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 182699.00 10.04 3859.53 97.45 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 1542966.00 84.83 32595.24 97.39 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 9809.00 0.54 207.22 100.0 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.02 100.0 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1577.00 0.09 33.31 100.0 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 1.00 0.20 0.02 100.0 SNHG14-234 lncRNA placental pericyte (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 3.00 0.59 0.06 100.0 SNHG14-234 lncRNA placental pericyte (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 1.00 0.58 0.02 100.0 ENST00000655317 lncRNA placental pericyte (Primary cell)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 5.00 10.42 0.11 100.0 SNHG14-261 lncRNA placental pericyte (Primary cell)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 3.00 6.25 0.06 100.0 SNHG14-261 lncRNA placental pericyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 8149.00 17.17 172.15 100.0 SNHG1-248 lncRNA placental pericyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 4118.00 8.68 86.99 100.0 SNHG1-248 lncRNA placental pericyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 22298.00 46.98 471.05 100.0 SNHG1-248 lncRNA placental pericyte (Primary cell)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 2.00 0.08 0.04 100.0 SNHG14-315 lncRNA placental pericyte (Primary cell)