ENCFF000JLV

Library Details

Organism: Homo Sapiens
Biosample: placental pericyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVG
Description: Part of ENCODE experiment ENCSR000CVG. The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1903.00 3.46 40.20 100.0 SNHG5-273 lncRNA placental pericyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 15292.00 27.77 323.04 77.92 SNHG5-273 lncRNA placental pericyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 27160.00 49.33 573.76 90.94 SNHG5-273 lncRNA placental pericyte (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 2501.00 84.21 52.83 100.0 SNHG14-336 lncRNA placental pericyte (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 4483.00 62.42 94.70 100.0 NCL-216 retained intron placental pericyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 0.99 0.01 0.02 99.0 SNHG19-202 lncRNA placental pericyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 0.98 0.01 0.02 98.23 SNHG19-202 lncRNA placental pericyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 8955.39 47.30 189.18 67.21 SNHG19-202 lncRNA placental pericyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 4186.67 22.11 88.44 37.22 SNHG19-202 lncRNA placental pericyte (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 4273.00 39.46 90.27 100.0 SNHG8-214 lncRNA placental pericyte (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 2241.00 63.48 47.34 100.0 ENST00000722183 lncRNA placental pericyte (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 3511.00 84.14 74.17 100.0 ENST00000747512 lncRNA placental pericyte (Primary cell)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 1.00 2.27 0.02 100.0 ENST00000747675 lncRNA placental pericyte (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 11.00 0.05 0.23 100.0 ENST00000772672 lncRNA placental pericyte (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 19790.00 90.02 418.06 100.0 ENST00000772672 lncRNA placental pericyte (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 2.00 1.56 0.04 15.38 ENST00000788343 lncRNA placental pericyte (Primary cell)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 7.00 0.14 0.15 100.0 ENST00000823279 lncRNA placental pericyte (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 45.00 0.91 0.95 4.39 ENST00000823279 lncRNA placental pericyte (Primary cell)