ENCFF000JLV

Library Details

Organism: Homo Sapiens
Biosample: placental pericyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVG
Description: Part of ENCODE experiment ENCSR000CVG. The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 485280.00 98.70 10251.57 99.56 RPL5-205 retained intron placental pericyte (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 71.00 0.01 1.50 100.0 RPL5-205 retained intron placental pericyte (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 101.00 2.40 2.13 100.0 RACK1-230 retained intron placental pericyte (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 4616.00 4.31 97.51 100.0 SNHG6-204 retained intron placental pericyte (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 95941.00 89.59 2026.76 100.0 SNHG6-204 retained intron placental pericyte (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 13.00 0.54 0.27 72.22 WDR74-204 protein coding placental pericyte (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 6591.00 56.87 139.24 68.0 HSPA8-211 retained intron placental pericyte (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 1811.00 83.92 38.26 100.0 RPS13-208 retained intron placental pericyte (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 12035.00 84.46 254.24 100.0 HSPA8-215 retained intron placental pericyte (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1424.00 67.30 30.08 100.0 RPL4-214 retained intron placental pericyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 1151.00 14.42 24.31 100.0 ENST00000570843 lncRNA placental pericyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 4851.00 60.78 102.48 100.0 ENST00000570843 lncRNA placental pericyte (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 5.00 0.65 0.11 100.0 SNORD3C-201 snoRNA placental pericyte (Primary cell)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1.00 1.72 0.02 100.0 RPL23A-208 retained intron placental pericyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1.90 0.07 0.04 63.44 C19orf48P-203 retained intron placental pericyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1.73 0.07 0.04 86.48 C19orf48P-203 retained intron placental pericyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1436.00 54.79 30.34 100.0 C19orf48P-203 retained intron placental pericyte (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 133.00 12.44 2.81 100.0 RPS11-206 retained intron placental pericyte (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 8.00 0.74 0.17 100.0 ENST00000602478 lncRNA placental pericyte (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 1430.00 44.33 30.21 100.0 NOP56-219 retained intron placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1.00 0.01 0.02 100.0 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 57.34 0.31 1.21 31.85 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 7.00 0.04 0.15 70.0 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 10129.00 54.46 213.98 100.0 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 106.00 0.57 2.24 60.23 U2.3-201 snRNA placental pericyte (Primary cell)