ENCFF000JLU

Library Details

Organism: Homo Sapiens
Biosample: placental pericyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVG
Description: Part of ENCODE experiment ENCSR000CVG. The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 9.00 6.29 1.10 100.0 SNHG14-224 lncRNA placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 556.00 0.33 68.09 100.0 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 73305.00 43.27 8977.44 94.45 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 264.00 0.16 32.33 100.0 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 48639.00 28.71 5956.67 69.51 GAS5-230 retained intron placental pericyte (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1004.00 78.56 122.96 100.0 ENST00000651540 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 20760.00 8.18 2542.41 95.6 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 216773.00 85.46 26547.53 96.17 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 707.00 0.28 86.58 100.0 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 723.00 0.29 88.54 100.0 SNHG29-232 lncRNA placental pericyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1289.00 24.38 157.86 100.0 SNHG1-248 lncRNA placental pericyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 197.00 3.73 24.13 100.0 SNHG1-248 lncRNA placental pericyte (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 2054.00 38.84 251.55 100.0 SNHG1-248 lncRNA placental pericyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 311.00 2.41 38.09 100.0 SNHG5-273 lncRNA placental pericyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 2511.00 19.44 307.51 64.19 SNHG5-273 lncRNA placental pericyte (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 7312.00 56.61 895.48 88.45 SNHG5-273 lncRNA placental pericyte (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 92.00 75.41 11.27 100.0 SNHG14-336 lncRNA placental pericyte (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1517.00 41.53 185.78 100.0 NCL-216 retained intron placental pericyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1856.34 47.54 227.34 70.24 SNHG19-202 lncRNA placental pericyte (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 771.63 19.76 94.50 34.43 SNHG19-202 lncRNA placental pericyte (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 320.00 21.25 39.19 100.0 SNHG8-214 lncRNA placental pericyte (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 588.00 67.51 72.01 100.0 ENST00000722183 lncRNA placental pericyte (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 2999.00 79.74 367.28 100.0 ENST00000747512 lncRNA placental pericyte (Primary cell)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 1.00 0.86 0.12 100.0 ENST00000747675 lncRNA placental pericyte (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 3.00 0.05 0.37 100.0 ENST00000772672 lncRNA placental pericyte (Primary cell)