ENCFF000JLU

Library Details

Organism: Homo Sapiens
Biosample: placental pericyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVG
Description: Part of ENCODE experiment ENCSR000CVG. The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 11511.00 90.64 1409.72 100.0 SNHG6-204 retained intron placental pericyte (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 175.00 0.88 21.43 46.54 WDR74-204 protein coding placental pericyte (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 212.00 61.27 25.96 78.52 HSPA8-211 retained intron placental pericyte (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 534.00 75.00 65.40 100.0 RPS13-208 retained intron placental pericyte (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3597.00 81.92 440.51 100.0 HSPA8-215 retained intron placental pericyte (Primary cell)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 2.00 0.01 0.24 100.0 ENST00000554988 lncRNA placental pericyte (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1489.00 67.53 182.35 100.0 RPL4-214 retained intron placental pericyte (Primary cell)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1.00 0.05 0.12 100.0 RPL4-214 retained intron placental pericyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 1640.00 10.44 200.85 100.0 ENST00000570843 lncRNA placental pericyte (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 8858.00 56.37 1084.81 100.0 ENST00000570843 lncRNA placental pericyte (Primary cell)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 1.00 0.01 0.12 100.0 SNORD3C-201 snoRNA placental pericyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.10 0.12 31.72 C19orf48P-203 retained intron placental pericyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.09 0.11 86.48 C19orf48P-203 retained intron placental pericyte (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 572.00 62.45 70.05 100.0 C19orf48P-203 retained intron placental pericyte (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 38.00 12.34 4.65 100.0 RPS11-206 retained intron placental pericyte (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3.00 0.05 0.37 100.0 ENST00000602478 lncRNA placental pericyte (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 705.00 46.20 86.34 100.0 NOP56-219 retained intron placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 1.00 0.00 0.12 100.0 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 221.36 0.25 27.11 31.0 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 44766.00 50.67 5482.36 100.0 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 55.00 0.06 6.74 59.78 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 401.31 0.45 49.15 56.21 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 31.29 0.04 3.83 22.04 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 84.62 0.10 10.36 71.71 U2.3-201 snRNA placental pericyte (Primary cell)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1.00 0.00 0.12 100.0 U2.6-201 snRNA placental pericyte (Primary cell)