ENCFF000JLU

Library Details

Organism: Homo Sapiens
Biosample: placental pericyte (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVG
Description: Part of ENCODE experiment ENCSR000CVG. The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 35.49 3.96 4.35 18.01 RNU5A-1-201 snRNA placental pericyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 6.00 0.67 0.73 66.67 RNU5A-1-201 snRNA placental pericyte (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 141.36 15.79 17.31 74.4 RNU5A-1-201 snRNA placental pericyte (Primary cell)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 2.00 0.28 0.24 100.0 RNU5B-1-201 snRNA placental pericyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 2.00 0.02 0.24 100.0 7SK.1-201 misc RNA placental pericyte (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 189.00 1.79 23.15 100.0 7SK.1-201 misc RNA placental pericyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 26.00 3.43 3.18 96.3 SNORD83A-201 snoRNA placental pericyte (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 3.00 0.40 0.37 100.0 SNORD83A-201 snoRNA placental pericyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 988.00 66.85 121.00 100.0 SNORD12B-201 snoRNA placental pericyte (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 214.00 14.48 26.21 100.0 SNORD12B-201 snoRNA placental pericyte (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 13059.00 74.08 1599.30 100.0 SNHG3-202 retained intron placental pericyte (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 1579.00 69.74 193.38 100.0 SNORD124-201 snoRNA placental pericyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 12.00 0.30 1.47 100.0 RPL3-212 retained intron placental pericyte (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2755.00 68.23 337.40 85.0 RPL3-212 retained intron placental pericyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 405.00 4.75 49.60 100.0 RPL13A-212 retained intron placental pericyte (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 6120.00 71.76 749.50 100.0 RPL13A-212 retained intron placental pericyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 1372.00 14.60 168.02 100.0 RPL7A-207 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 6976.00 74.24 854.33 100.0 RPL7A-207 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1760.00 38.85 215.54 100.0 RABGGTB-213 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 752.00 16.60 92.10 100.0 RABGGTB-213 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 3.00 0.07 0.37 100.0 RABGGTB-213 protein coding CDS not defined placental pericyte (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 94182.00 98.31 11534.18 99.53 RPL5-205 retained intron placental pericyte (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 39.00 0.04 4.78 100.0 RPL5-205 retained intron placental pericyte (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 7.00 0.60 0.86 100.0 RACK1-230 retained intron placental pericyte (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 456.00 3.59 55.84 100.0 SNHG6-204 retained intron placental pericyte (Primary cell)