ENCFF000JLH

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 7.00 0.05 0.16 63.64 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3643.00 24.41 81.99 100.0 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 53.00 0.36 1.19 46.9 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 341.23 2.29 7.68 69.64 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 9.00 0.06 0.20 100.0 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 69.54 0.47 1.57 53.08 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 55.89 0.37 1.26 59.46 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 172.00 4.99 3.87 100.0 SNHG14-224 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 14.00 0.41 0.32 100.0 SNHG14-224 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1.00 0.00 0.02 33.33 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 7042.00 0.83 158.49 100.0 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 289946.00 34.36 6525.44 95.72 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1.00 0.00 0.02 100.0 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 748.00 0.09 16.83 100.0 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 258733.00 30.66 5822.97 79.38 GAS5-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1.00 0.00 0.02 100.0 ENST00000651540 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 4.00 0.02 0.09 100.0 ENST00000651540 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 19828.00 78.90 446.24 100.0 ENST00000651540 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 307272.00 29.29 6915.37 98.19 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 685915.00 65.39 15437.00 96.71 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 3322.00 0.32 74.76 100.0 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 4.00 0.00 0.09 100.0 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 540.00 0.05 12.15 100.0 SNHG29-232 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 3.00 0.22 0.07 100.0 SNHG14-234 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 8.00 0.40 0.18 100.0 ENST00000655317 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)