ENCFF000JLH

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 15.00 65.22 0.34 100.0 SNHG14-288 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 8443.00 8.14 190.02 100.0 SNHG1-248 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 40075.00 38.64 901.92 100.0 SNHG1-248 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 1.00 0.00 0.02 100.0 SNHG1-248 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 25841.00 24.92 581.57 100.0 SNHG1-248 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 9.00 0.19 0.20 100.0 SNHG14-315 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 4416.00 7.27 99.39 100.0 SNHG5-273 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 27842.00 45.82 626.60 85.33 SNHG5-273 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 15665.00 25.78 352.55 86.83 SNHG5-273 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 2391.00 76.17 53.81 100.0 SNHG14-336 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 1.00 0.11 0.02 100.0 SNHG14-341 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 3548.00 65.75 79.85 100.0 NCL-216 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 6896.73 44.50 155.22 83.5 SNHG19-202 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1675.10 10.81 37.70 38.05 SNHG19-202 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 2758.00 39.04 62.07 100.0 SNHG8-214 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 7832.00 70.36 176.26 100.0 ENST00000722183 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 31761.00 85.08 714.80 100.0 ENST00000747512 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 18.00 0.06 0.41 100.0 ENST00000772672 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 27603.00 84.49 621.22 100.0 ENST00000772672 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 1.46 0.04 0.03 72.83 SNHG25-206 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 1.31 0.03 0.03 65.39 SNHG25-206 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 19.00 5.78 0.43 79.17 ENST00000788343 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 7.00 0.10 0.16 100.0 ENST00000823279 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 142.00 2.10 3.20 22.33 ENST00000823279 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)