ENCFF000JLH

Library Details

Organism: Homo Sapiens
Biosample: mesenchymal stem cell of the bone marrow (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVS
Description: Part of ENCODE experiment ENCSR000CVS. The libraries contained in this experiment come from bone marrow derived mesenchymal stem cell primary whole cells, hMSC-BM isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 1254.00 14.19 28.22 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 3593.00 40.67 80.86 100.0 RABGGTB-213 protein coding CDS not defined mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 703570.00 98.14 15834.33 99.7 RPL5-205 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 267.00 0.04 6.01 100.0 RPL5-205 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 5982.00 57.10 134.63 100.0 RACK1-230 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 10323.00 13.99 232.33 100.0 SNHG6-204 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_407_+ 328–407 55586.00 75.34 1251.00 100.0 SNHG6-204 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 48.00 1.28 1.08 77.42 WDR74-204 protein coding mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 2.00 0.01 0.05 100.0 HSPA8-211 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 10656.00 54.18 239.82 66.41 HSPA8-211 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 8328.00 90.01 187.43 100.0 RPS13-208 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3756.00 92.22 84.53 100.0 HSPA8-215 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 6447.00 74.84 145.09 100.0 RPL4-214 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 2018.00 48.02 45.42 100.0 ENST00000570843 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 900.00 21.42 20.26 100.0 ENST00000570843 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1.00 0.90 0.02 100.0 RPL23A-208 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 1.00 0.01 0.02 100.0 SNORD3A-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.09 0.02 47.58 C19orf48P-203 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 0.86 0.09 0.02 43.24 C19orf48P-203 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 568.00 56.57 12.78 100.0 C19orf48P-203 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 118.00 10.72 2.66 100.0 RPS11-206 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 7.00 0.44 0.16 100.0 ENST00000602478 lncRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 2.00 100.00 0.05 100.0 SNORD11B-201 snoRNA mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 6026.00 63.61 135.62 100.0 NOP56-219 retained intron mesenchymal stem cell of the bone marrow (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 189.42 1.27 4.26 38.66 U2.3-201 snRNA mesenchymal stem cell of the bone marrow (Primary cell)