ENCFF000JEC

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1237.00 1.24 103.49 100.0 SNHG5-273 lncRNA neural cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 61903.00 61.93 5179.09 91.54 SNHG5-273 lncRNA neural cell (In vitro differentiated cells)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 18720.00 18.73 1566.20 88.42 SNHG5-273 lncRNA neural cell (In vitro differentiated cells)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 19729.00 75.20 1650.62 100.0 SNHG14-336 lncRNA neural cell (In vitro differentiated cells)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 16446.00 78.70 1375.95 100.0 NCL-216 retained intron neural cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 1686.65 39.02 141.11 67.82 SNHG19-202 lncRNA neural cell (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 830.71 19.22 69.50 41.45 SNHG19-202 lncRNA neural cell (In vitro differentiated cells)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 440.00 51.34 36.81 100.0 SNHG8-214 lncRNA neural cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 152.00 44.31 12.72 100.0 ENST00000722183 lncRNA neural cell (In vitro differentiated cells)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 36.00 70.59 3.01 100.0 ENST00000747512 lncRNA neural cell (In vitro differentiated cells)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 26.00 0.06 2.18 44.07 SNHG14-356 lncRNA neural cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_26_113_+ 26–113 16.00 0.01 1.34 100.0 ENST00000772672 lncRNA neural cell (In vitro differentiated cells)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 121889.00 87.94 10197.79 100.0 ENST00000772672 lncRNA neural cell (In vitro differentiated cells)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 2066.00 69.94 172.85 100.0 ENST00000788343 lncRNA neural cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 1.00 0.00 0.08 100.0 ENST00000823279 lncRNA neural cell (In vitro differentiated cells)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 4433.00 12.10 370.89 27.91 ENST00000823279 lncRNA neural cell (In vitro differentiated cells)