ENCFF000JEC

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 10.00 2.10 0.84 40.0 RNU5A-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 36.24 7.61 3.03 57.53 RNU5A-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 37.20 7.82 3.11 68.89 RNU5A-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 1.00 16.67 0.08 100.0 SNORD115-9-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 3.00 0.14 0.25 100.0 RNU5B-1-201 snRNA neural cell (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 12.00 0.06 1.00 100.0 RNY1-201 misc RNA neural cell (In vitro differentiated cells)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 1.00 14.29 0.08 100.0 SNORD115-23-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 72.00 2.24 6.02 100.0 7SK.1-201 misc RNA neural cell (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 1235.00 38.43 103.33 100.0 7SK.1-201 misc RNA neural cell (In vitro differentiated cells)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 1.00 100.00 0.08 100.0 MIR99B-201 miRNA neural cell (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1.00 0.01 0.08 100.0 SNORD90-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 43215.00 66.32 3615.57 100.0 SNORD12B-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 14328.00 21.99 1198.75 100.0 SNORD12B-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 54.00 0.42 4.52 100.0 TMEM107-204 protein coding neural cell (In vitro differentiated cells)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 3732.00 65.30 312.24 100.0 SNHG3-202 retained intron neural cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 780.00 65.33 65.26 100.0 SNORD124-201 snoRNA neural cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 2270.00 50.25 189.92 67.16 RPL3-212 retained intron neural cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 12.00 0.27 1.00 100.0 RPL3-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 114086.00 77.48 9544.96 100.0 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 368.00 0.25 30.79 100.0 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 356.00 0.24 29.78 95.44 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1.00 0.00 0.08 100.0 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 1.00 0.00 0.08 100.0 RPL13A-212 retained intron neural cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 5190.00 39.36 434.22 100.0 RPL7A-207 protein coding CDS not defined neural cell (In vitro differentiated cells)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 6694.00 50.76 560.05 100.0 RPL7A-207 protein coding CDS not defined neural cell (In vitro differentiated cells)