ENCFF000JEC

Library Details

Organism: Homo Sapiens
Biosample: neural cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVR
Description: Part of ENCODE experiment ENCSR000CVR. The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, H1-neurons. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 451.77 13.81 37.80 72.17 U2.3-201 snRNA neural cell (In vitro differentiated cells)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1.00 6.25 0.08 100.0 ENST00000625572 miRNA neural cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 31483.00 55.84 2634.01 100.0 SNHG14-224 lncRNA neural cell (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 1.00 0.00 0.08 100.0 SNHG14-224 lncRNA neural cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 617.00 0.95 51.62 100.0 GAS5-230 retained intron neural cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 16001.00 24.71 1338.72 95.91 GAS5-230 retained intron neural cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 855.00 1.32 71.53 100.0 GAS5-230 retained intron neural cell (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 14277.00 22.05 1194.48 81.04 GAS5-230 retained intron neural cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 10.00 0.01 0.84 100.0 ENST00000651540 lncRNA neural cell (In vitro differentiated cells)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 109436.00 84.79 9155.92 100.0 ENST00000651540 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 31503.00 26.25 2635.69 99.61 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 80260.00 66.88 6714.92 93.93 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 435.00 0.36 36.39 100.0 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 37.00 0.03 3.10 100.0 SNHG29-232 lncRNA neural cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 162.00 2.56 13.55 100.0 SNHG14-234 lncRNA neural cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 37.00 0.58 3.10 100.0 SNHG14-234 lncRNA neural cell (In vitro differentiated cells)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 6.00 0.09 0.50 100.0 SNHG14-234 lncRNA neural cell (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 22.00 0.60 1.84 100.0 SNHG14-241 lncRNA neural cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 17.00 3.02 1.42 100.0 SNHG14-261 lncRNA neural cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 27.00 2.74 2.26 100.0 SNHG14-278 lncRNA neural cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 377.00 1.16 31.54 100.0 SNHG1-248 lncRNA neural cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 17440.00 53.81 1459.11 100.0 SNHG1-248 lncRNA neural cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 7400.00 22.83 619.12 100.0 SNHG1-248 lncRNA neural cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 6.00 0.01 0.50 100.0 SNHG14-315 lncRNA neural cell (In vitro differentiated cells)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 1.00 0.00 0.08 100.0 SNHG14-315 lncRNA neural cell (In vitro differentiated cells)