ENCFF000JLG

Library Details

Organism: Homo Sapiens
Biosample: osteoblast (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUW
Description: Part of ENCODE experiment ENCSR000CUW. The libraries contained in this experiment come from osteoblast primary whole cells, HOB isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 6.00 1.43 0.58 100.0 WDR74-204 protein coding osteoblast (Primary cell)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 1.00 0.06 0.10 100.0 HSPA8-211 retained intron osteoblast (Primary cell)
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 912.00 54.81 87.43 65.42 HSPA8-211 retained intron osteoblast (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 1066.00 84.20 102.19 100.0 RPS13-208 retained intron osteoblast (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 2031.00 83.14 194.71 100.0 HSPA8-215 retained intron osteoblast (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 987.00 76.16 94.62 100.0 RPL4-214 retained intron osteoblast (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 224.00 21.17 21.47 100.0 ENST00000570843 lncRNA osteoblast (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 572.00 54.06 54.84 100.0 ENST00000570843 lncRNA osteoblast (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 0.95 0.07 0.09 47.58 C19orf48P-203 retained intron osteoblast (Primary cell)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1.73 0.13 0.17 86.48 C19orf48P-203 retained intron osteoblast (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 857.00 62.06 82.16 100.0 C19orf48P-203 retained intron osteoblast (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 82.00 20.92 7.86 100.0 RPS11-206 retained intron osteoblast (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 481.00 48.34 46.11 100.0 NOP56-219 retained intron osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 30.48 0.43 2.92 36.29 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 3660.00 51.67 350.87 100.0 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 4.00 0.06 0.38 66.67 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 52.87 0.75 5.07 62.94 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 7.82 0.11 0.75 46.02 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 9.32 0.13 0.89 66.54 U2.3-201 snRNA osteoblast (Primary cell)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 17.00 4.71 1.63 100.0 SNHG14-224 lncRNA osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 707.00 0.26 67.78 100.0 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 126254.00 46.08 12103.64 94.61 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 683.00 0.25 65.48 100.0 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 61740.00 22.53 5918.85 75.77 GAS5-230 retained intron osteoblast (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 904.00 75.59 86.66 100.0 ENST00000651540 lncRNA osteoblast (Primary cell)