ENCFF000JLG

Library Details

Organism: Homo Sapiens
Biosample: osteoblast (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CUW
Description: Part of ENCODE experiment ENCSR000CUW. The libraries contained in this experiment come from osteoblast primary whole cells, HOB isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 124075.00 25.62 11894.74 98.16 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 333028.00 68.76 31926.52 96.46 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1823.00 0.38 174.77 100.0 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 668.00 0.14 64.04 100.0 SNHG29-232 lncRNA osteoblast (Primary cell)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 2.00 0.35 0.19 100.0 ENST00000655317 lncRNA osteoblast (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1042.00 19.34 99.89 100.0 SNHG1-248 lncRNA osteoblast (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 952.00 17.67 91.27 100.0 SNHG1-248 lncRNA osteoblast (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 1594.00 29.59 152.81 100.0 SNHG1-248 lncRNA osteoblast (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 882.00 7.49 84.56 100.0 SNHG5-273 lncRNA osteoblast (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 6141.00 52.18 588.72 85.56 SNHG5-273 lncRNA osteoblast (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 1436.00 12.20 137.67 64.28 SNHG5-273 lncRNA osteoblast (Primary cell)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 1.00 0.01 0.10 100.0 SNHG5-273 lncRNA osteoblast (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 366.00 73.94 35.09 100.0 SNHG14-336 lncRNA osteoblast (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 1205.00 68.70 115.52 100.0 NCL-216 retained intron osteoblast (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 5435.71 55.23 521.11 78.82 SNHG19-202 lncRNA osteoblast (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1378.26 14.00 132.13 28.06 SNHG19-202 lncRNA osteoblast (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 652.00 46.64 62.51 100.0 SNHG8-214 lncRNA osteoblast (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 1993.00 86.77 191.06 100.0 ENST00000722183 lncRNA osteoblast (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 3694.00 86.07 354.13 100.0 ENST00000747512 lncRNA osteoblast (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 6402.00 91.94 613.74 100.0 ENST00000772672 lncRNA osteoblast (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 13.00 1.01 1.25 5.12 ENST00000823279 lncRNA osteoblast (Primary cell)