ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 1083.00 38.60 0.66 100.0 SNORD114-22-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 68657.00 94.55 41.65 100.0 SNORD6-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 171.00 0.24 0.10 100.0 SNORD6-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 1480.00 24.63 0.90 100.0 RNY3-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 247.00 1.34 0.15 100.0 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 4014.91 21.79 2.44 63.59 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 3717.00 20.17 2.26 89.05 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 500.00 2.71 0.30 100.0 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 800.00 4.34 0.49 75.33 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 2435.74 13.22 1.48 38.58 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 2885.00 15.66 1.75 100.0 SNORD82-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 2414.00 96.71 1.46 97.97 MIR146B-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 4.00 3.17 0.00 100.0 SNHG20-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 44.00 22.34 0.03 100.0 ATP5MK-205 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 25.00 9.43 0.02 100.0 LINC01556-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 94.00 31.86 0.06 100.0 ATAD3A-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 128.00 26.34 0.08 57.66 TMC5-202 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 4273.00 96.70 2.59 100.0 ZMYM2-203 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 370.00 3.73 0.22 100.0 RNVU1-7-201 snRNA neural progenitor cell (In vitro differentiated cells)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 19965.00 95.66 12.11 100.0 SNORD24-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 2389.00 95.71 1.45 100.0 Y_RNA.389-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 17036.00 8.31 10.34 77.74 SNORD101-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 183762.00 89.59 111.49 98.94 SNORD101-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 70.00 0.03 0.04 100.0 SNORD101-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 80.00 0.04 0.05 100.0 SNORD101-201 snoRNA neural progenitor cell (In vitro differentiated cells)