ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 462.00 69.16 0.28 100.0 B4GALT1-203 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 190.00 11.57 0.12 100.0 ENST00000722183 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 232.00 14.13 0.14 72.73 ENST00000722183 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 110.00 6.70 0.07 100.0 ENST00000722183 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 36.00 49.32 0.02 100.0 MIR34BHG-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 164993.00 84.06 100.10 89.44 THBS3-AS1-228 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 30.00 26.32 0.02 100.0 MIR200CHG-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 37.00 32.46 0.02 100.0 MIR200CHG-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 29975.00 71.06 18.19 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 84.00 0.20 0.05 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 132.00 0.31 0.08 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 95.00 0.23 0.06 100.0 SNHG16-266 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 6.00 30.00 0.00 100.0 MEG8-261 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 143.00 21.25 0.09 100.0 NR2F2-AS1-327 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 301.00 4.49 0.18 40.29 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 2275.00 33.95 1.38 100.0 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 233.00 3.48 0.14 43.63 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 213.00 3.18 0.13 41.44 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 736.00 10.98 0.45 100.0 ENST00000747675 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 9389.00 33.17 5.70 85.59 SNHG26-250 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 10127.00 35.77 6.14 79.81 SNHG26-250 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 104.00 11.93 0.06 100.0 LINC02422-207 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 77.00 0.81 0.05 100.0 ENST00000753088 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 14.00 0.15 0.01 100.0 ENST00000753088 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 273.37 1.82 0.17 23.33 ENST00000756336 lncRNA neural progenitor cell (In vitro differentiated cells)