ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 4487.00 98.38 2.72 100.0 HPS4-237 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 50.00 73.53 0.03 100.0 MEG8-253 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 3.00 4.69 0.00 100.0 MEG9-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 6.00 9.38 0.00 100.0 MEG9-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 28.00 43.75 0.02 100.0 MEG9-206 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 945.00 13.33 0.57 100.0 DNAJC5-203 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 336.00 19.80 0.20 100.0 ENST00000707189 TEC neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 19691.00 5.93 11.95 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 113896.47 34.33 69.10 42.33 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 94.00 0.03 0.06 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 38.00 0.01 0.02 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 178973.72 53.94 108.58 60.33 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 431.00 0.13 0.26 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 2551.00 0.77 1.55 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 507.00 0.15 0.31 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 1485.00 0.45 0.90 100.0 MIR17HG-214 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 6505.00 0.72 3.95 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 137.00 0.02 0.08 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 261.00 0.03 0.16 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 26662.00 2.96 16.18 94.59 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 861055.00 95.63 522.41 100.0 SNHG32-223 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 207022.00 95.21 125.60 96.45 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 54.00 0.02 0.03 100.0 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 41.00 0.02 0.02 100.0 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 36.00 0.02 0.02 100.0 SNHG32-227 lncRNA neural progenitor cell (In vitro differentiated cells)