ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 15725.00 18.09 9.54 100.0 ENST00000655317 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 3208.00 3.69 1.95 67.24 ENST00000655317 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 14804.00 17.03 8.98 100.0 ENST00000655317 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 195.00 1.85 0.12 46.88 LINC01962-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 1632.00 15.46 0.99 100.0 LINC01962-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 189.00 1.79 0.11 100.0 LINC01962-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000655965.1 ENST00000655965.1_2745_2837_+ 2745–2837 44006.00 24.51 26.70 99.61 SNHG14-241 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000656987.1 ENST00000656987.1_14_79_+ 14–79 1316.00 85.62 0.80 100.0 MEG8-228 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000657237.1 ENST00000657237.1_1408_1496_+ 1408–1496 11052.00 23.50 6.71 100.0 SNHG14-254 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_2_96_+ 2–96 27790.00 12.59 16.86 100.0 SNHG14-261 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658769.1 ENST00000658769.1_810_903_+ 810–903 162270.00 73.49 98.45 95.55 SNHG14-261 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 5.00 0.05 0.00 100.0 LIMD1-AS1-204 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_139_214_+ 139–214 4998.00 51.94 3.03 100.0 LIMD1-AS1-204 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 1040.00 10.81 0.63 86.81 LIMD1-AS1-204 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1071_1093_+ 1071–1093 47.00 85.45 0.03 95.92 MIR99AHG-262 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000659483.3 ENST00000659483.3_1110_1131_+ 1110–1131 4.00 7.27 0.00 100.0 MIR99AHG-262 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000660956.1 ENST00000660956.1_2_92_+ 2–92 47174.00 78.63 28.62 100.0 SNHG14-270 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661541.1 ENST00000661541.1_446_534_+ 446–534 811.00 0.14 0.49 100.0 SNHG14-275 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 9.00 3.66 0.01 100.0 MIR9-2HG-225 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_36_69_+ 36–69 2.00 1.02 0.00 100.0 MEG8-233 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661815.1 ENST00000661815.1_2_70_+ 2–70 11.00 5.61 0.01 100.0 MEG8-233 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_1145_1233_+ 1145–1233 9482.00 1.50 5.75 100.0 SNHG14-278 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000661889.1 ENST00000661889.1_2_92_+ 2–92 590008.00 93.10 357.96 97.67 SNHG14-278 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1206_1269_+ 1206–1269 72.00 5.98 0.04 100.0 MEG8-234 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000662228.1 ENST00000662228.1_1205_1272_+ 1205–1272 648.00 53.78 0.39 100.0 MEG8-234 lncRNA neural progenitor cell (In vitro differentiated cells)