ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 6690.00 90.34 4.06 100.0 SNHG17-252 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_3_89_+ 3–89 12294.00 9.32 7.46 49.82 SNHG14-288 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000663945.1 ENST00000663945.1_2_92_+ 2–92 106350.00 80.66 64.52 93.69 SNHG14-288 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000665397.1 ENST00000665397.1_2_81_+ 2–81 30.00 18.63 0.02 100.0 SNHG14-295 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 181.00 58.01 0.11 100.0 MEG8-240 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 22118.00 49.76 13.42 100.0 SNHG14-303 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 2.00 0.30 0.00 100.0 SNHG14-306 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 531.00 80.09 0.32 100.0 SNHG14-306 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 2497.00 11.20 1.51 100.0 ENST00000666735 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 1366.00 6.13 0.83 100.0 ENST00000666735 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 158.00 38.92 0.10 100.0 MEG8-242 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 16113.06 13.58 9.78 14.67 SNHG14-312 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 93712.39 78.96 56.86 85.31 SNHG14-312 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 277.00 0.23 0.17 100.0 SNHG14-312 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 2.00 0.16 0.00 100.0 MEG8-244 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 909.00 72.49 0.55 90.99 MEG8-244 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 102.00 0.00 0.06 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 287.00 0.00 0.17 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 6974.00 0.05 4.23 94.64 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 732.66 0.01 0.44 63.49 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 4745.00 0.04 2.88 81.99 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 7165920.00 53.78 4347.61 97.55 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 400.00 0.00 0.24 64.83 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 192585.00 1.45 116.84 99.86 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 3842.00 0.03 2.33 100.0 SNHG1-248 lncRNA neural progenitor cell (In vitro differentiated cells)