ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 448.00 0.30 0.27 81.9 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 187.00 0.12 0.11 100.0 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 521.00 0.34 0.32 100.0 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 390.00 0.26 0.24 100.0 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 51976.00 84.83 31.53 100.0 HSPA8-211 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 90.00 4.34 0.05 100.0 SCARNA9-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 409747.00 97.73 248.60 100.0 TAF1D-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 1238.00 0.30 0.75 100.0 TAF1D-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 182.00 0.13 0.11 100.0 HSPA8-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 132725.00 92.17 80.53 100.0 HSPA8-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 768.00 0.53 0.47 100.0 HSPA8-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 651.00 25.89 0.39 100.0 RPS2-215 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 35.00 77.78 0.02 81.4 ENST00000548801 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 695.00 10.47 0.42 100.0 ENST00000554988 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 33.00 0.50 0.02 100.0 ENST00000554988 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 2259.00 34.04 1.37 100.0 ENST00000554988 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 52787.00 38.55 32.03 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 67405.00 49.23 40.90 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 5811.00 4.24 3.53 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 110.00 0.08 0.07 100.0 SNHG14-220 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 645.00 99.08 0.39 100.0 TEKT4P2-201 transcribed unprocessed pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 6261.00 1.80 3.80 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 38.00 0.01 0.02 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1260.00 0.36 0.76 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 327688.00 94.04 198.81 98.68 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)