ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 223465.00 74.04 135.58 83.17 RACK1-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 68953.00 22.84 41.83 62.98 RACK1-230 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 121.00 2.34 0.07 100.0 RNA5SP486-201 rRNA pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 594.00 91.95 0.36 100.0 SCARNA5-201 scaRNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 166.00 0.16 0.10 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 35730.00 35.16 21.68 96.62 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 5265.00 5.18 3.19 80.83 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 43.00 0.04 0.03 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 14.00 0.01 0.01 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 28.00 0.03 0.02 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 2527.00 2.49 1.53 95.57 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 44.00 0.04 0.03 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 474.00 0.47 0.29 26.44 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 334.00 0.33 0.20 78.77 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 43594.00 42.90 26.45 100.0 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 2625.00 2.58 1.59 96.15 RNY4-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 27.00 79.41 0.02 84.38 MIR3142HG-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 20183.00 71.90 12.25 100.0 SNHG6-204 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 4898.00 22.74 2.97 100.0 MIR151A-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 13906.00 64.56 8.44 86.11 MIR151A-201 miRNA neural progenitor cell (In vitro differentiated cells)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 5005.00 78.89 3.04 100.0 DENND3-221 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 187.00 0.12 0.11 100.0 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 213.00 0.14 0.13 59.66 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 2157.00 1.42 1.31 77.04 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 144.00 0.09 0.09 40.34 WDR74-204 protein coding neural progenitor cell (In vitro differentiated cells)