ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1654.00 0.47 1.00 100.0 RPL4-202 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1044.00 3.21 0.63 100.0 ENST00000563103 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 43443.00 90.77 26.36 100.0 RPL4-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 576.00 1.20 0.35 100.0 RPL4-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 1750.00 28.17 1.06 89.79 ENST00000565336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 2534.00 40.79 1.54 83.0 ENST00000565336 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 1195.00 0.21 0.73 100.0 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 4959.00 0.86 3.01 100.0 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 1411.00 0.24 0.86 100.0 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 548228.00 94.78 332.61 99.54 RBMX-210 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 9841.00 70.74 5.97 100.0 RPL4-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1889.00 13.58 1.15 100.0 RPL4-214 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 1379.13 24.43 0.84 53.48 POLG-DT-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 1211.95 21.47 0.74 66.44 POLG-DT-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 51.00 0.90 0.03 100.0 POLG-DT-202 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 5.00 0.35 0.00 100.0 ENST00000570843 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 240.00 17.02 0.15 100.0 ENST00000570843 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 19.00 73.08 0.01 100.0 MIR497HG-207 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 1036.00 96.28 0.63 99.14 MIR22HG-212 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 94.00 0.20 0.06 17.18 SNORD53B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 29803.00 64.94 18.08 66.5 SNORD53B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 453.00 0.99 0.27 82.82 SNORD53B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 100.00 87.72 0.06 100.0 ENST00000578036 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 19489.00 94.57 11.82 100.0 RPL23A-207 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 678.00 95.09 0.41 100.0 MIR744-201 miRNA neural progenitor cell (In vitro differentiated cells)