ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 27341.00 52.07 16.59 80.33 SNORD126-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 20927.00 84.09 12.70 86.68 SNORD124-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 173.00 8.04 0.10 100.0 SNHG12-201 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 1298.00 5.28 0.79 100.0 RPL3-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 11900.00 48.43 7.22 98.81 RPL3-212 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 4897.00 96.53 2.97 100.0 SMC1A-204 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 343335.00 96.83 208.30 99.31 RABGGTB-208 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 1549.00 29.83 0.94 91.12 DDX39B-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 298.00 5.74 0.18 100.0 DDX39B-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 59.00 1.14 0.04 100.0 DDX39B-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 8582.00 87.12 5.21 100.0 RPS8-206 protein coding CDS not defined neural progenitor cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 653.00 0.09 0.40 100.0 RPL13-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 719102.00 98.79 436.28 99.96 RPL13-207 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4638.00 0.36 2.81 81.71 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 499486.00 38.35 303.04 79.54 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 1927.00 0.15 1.17 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 716398.00 55.01 434.64 98.15 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 11578.00 0.89 7.02 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 2258.00 0.17 1.37 51.09 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 27512.00 2.11 16.69 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 9.00 0.00 0.01 100.0 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 6032.00 0.46 3.66 87.7 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 3635.00 0.28 2.21 80.03 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3991.00 0.31 2.42 61.32 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 306.00 0.02 0.19 38.11 EIF4A2-219 retained intron neural progenitor cell (In vitro differentiated cells)