ENCFF994BMY

Library Details

Organism: Homo Sapiens
Biosample: neural progenitor cell (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR828LSC
Description: Part of ENCODE experiment ENCSR828LSC. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 895.00 17.75 0.54 100.0 LINC01783-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 29.00 96.67 0.02 100.0 RPS7P15-201 processed pseudogene neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 24.00 0.44 0.01 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1533.00 28.19 0.93 81.5 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 1891.00 34.77 1.15 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 164.00 3.02 0.10 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 153.00 2.81 0.09 100.0 SNORD62B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 1019.00 98.36 0.62 100.0 MRPL32-203 nonsense mediated decay neural progenitor cell (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 28.00 82.35 0.02 100.0 ENST00000436739 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 117.00 0.76 0.07 100.0 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 562.00 3.67 0.34 55.04 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 91.00 0.59 0.06 100.0 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1401.00 9.14 0.85 100.0 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2104.00 13.72 1.28 56.57 TMEM107-204 protein coding neural progenitor cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 13323.00 40.35 8.08 73.53 SNHG16-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 15262.00 46.22 9.26 100.0 SNHG16-201 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 1.00 1.04 0.00 100.0 SNHG14-207 lncRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 494171.00 98.09 299.82 98.9 SNORD105B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 2257.00 81.42 1.37 97.37 SNORD121B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 141535.00 92.47 85.87 99.71 SNORD127-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 7.00 0.00 0.00 100.0 SNORD127-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 39617.00 91.52 24.04 100.0 SNORD42B-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 864.00 37.65 0.52 100.0 RNY4P25-201 misc RNA neural progenitor cell (In vitro differentiated cells)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 2102.00 55.24 1.28 100.0 SNORD121A-201 snoRNA neural progenitor cell (In vitro differentiated cells)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 27341.00 52.07 16.59 80.33 SNORD126-201 snoRNA neural progenitor cell (In vitro differentiated cells)