ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 1036.00 3.32 1.16 100.0 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 4480.00 65.72 5.00 100.0 SNORD14C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 3289.00 71.91 3.67 100.0 SNORD115-44-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 464.00 42.26 0.52 100.0 RNA5SP77-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 1454.00 32.54 1.62 100.0 SNORD114-22-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 2808.00 62.83 3.14 96.63 SNORD114-22-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1314.00 1.72 1.47 100.0 SNORD6-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 72091.00 94.11 80.50 100.0 SNORD6-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 1602.00 24.05 1.79 100.0 RNY3-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 15473.00 30.10 17.28 99.2 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 3150.00 6.13 3.52 100.0 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 6283.00 12.22 7.02 83.97 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 8336.33 16.22 9.31 40.62 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 12141.81 23.62 13.56 59.16 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1057.00 2.06 1.18 100.0 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 216.00 0.42 0.24 100.0 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 31630.00 94.68 35.32 96.12 MIR146B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 7.00 10.14 0.01 100.0 SNHG20-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 21.00 3.17 0.02 100.0 ATP5MK-205 protein coding hepatocyte (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 223.00 33.69 0.25 100.0 ATP5MK-205 protein coding hepatocyte (In vitro differentiated cells)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 17.00 20.48 0.02 100.0 LINC01556-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 168.00 20.66 0.19 100.0 ATAD3A-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 156.00 31.77 0.17 61.9 TMC5-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 248.00 87.02 0.28 100.0 ZMYM2-203 protein coding hepatocyte (In vitro differentiated cells)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 218.00 5.75 0.24 100.0 RNVU1-7-201 snRNA hepatocyte (In vitro differentiated cells)