ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 128.00 0.31 0.14 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 301.00 0.73 0.34 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 26462.00 11.59 29.55 96.64 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 50.00 0.02 0.06 71.43 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 34.00 0.01 0.04 59.65 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 10769.00 23.04 12.03 85.12 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 431.00 94.93 0.48 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 53.00 13.49 0.06 56.38 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 372.00 94.18 0.42 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 864.00 4.78 0.96 80.67 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 207.00 1.14 0.23 19.33 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 8885.00 49.13 9.92 81.87 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 539.15 5.94 0.60 9.25 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 152.00 1.68 0.17 75.62 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 6248.62 68.88 6.98 93.25 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 20765.00 86.68 23.19 89.18 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 8.00 0.29 0.01 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 2194.00 16.51 2.45 60.34 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 302.00 0.12 0.34 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 664.00 0.70 0.74 88.77 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 453.00 51.59 0.51 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 1200.00 27.12 1.34 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 259552.00 97.96 289.84 99.78 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 59.00 0.25 0.07 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 6903.00 29.00 7.71 77.09 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA hepatocyte (In vitro differentiated cells)