ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 83693.64 39.59 93.46 40.3 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 123289.43 58.33 137.68 70.41 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 19.58 0.01 0.02 85.13 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2.16 0.00 0.00 72.05 SNHG19-202 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 4889.00 59.36 5.46 100.0 MIR222HG-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1845.00 22.40 2.06 88.32 MIR222HG-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 499.00 6.06 0.56 100.0 MIR222HG-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 2.00 1.56 0.00 100.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 1.00 0.78 0.00 50.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 6.62 5.17 0.01 34.82 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 1.00 0.78 0.00 50.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 10.64 8.31 0.01 70.94 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 22.00 17.19 0.02 100.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 14.00 10.94 0.02 93.33 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 32.00 25.00 0.04 86.49 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 12.00 9.38 0.01 60.0 MIR302CHG-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 55.00 13.10 0.06 100.0 RPSA-216 retained intron hepatocyte (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 164.00 1.96 0.18 90.11 MIR99AHG-370 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 8034.00 95.95 8.97 99.09 MIR99AHG-370 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 1134.00 97.09 1.27 100.0 HPS4-237 retained intron hepatocyte (In vitro differentiated cells)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 1.00 16.67 0.00 100.0 MEG8-253 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1.00 2.56 0.00 100.0 MEG9-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 3.00 7.69 0.00 100.0 MEG9-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 9.00 23.08 0.01 100.0 MEG9-206 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1074.00 12.61 1.20 100.0 DNAJC5-203 nonsense mediated decay hepatocyte (In vitro differentiated cells)