ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 42.00 0.00 0.05 100.0 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 43.00 71.67 0.05 100.0 ENST00000597420 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 8619.00 48.57 9.62 100.0 RPS11-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 6861.00 38.66 7.66 100.0 RPS11-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 83352.00 86.26 93.08 87.32 CARMN-209 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2139.00 48.61 2.39 100.0 ENST00000602478 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 74.00 19.12 0.08 100.0 PPFIA1P1-201 processed pseudogene hepatocyte (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 350.00 66.79 0.39 100.0 SNORD114-21-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 54.00 10.31 0.06 100.0 SNORD114-21-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 5948.00 66.03 6.64 100.0 SNORD115-40-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 905.00 97.00 1.01 100.0 MIR98-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 2258.00 95.96 2.52 100.0 SNORD113-5-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 91.00 91.00 0.10 100.0 MIR15A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 2.00 100.00 0.00 100.0 MIR376C-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 565.00 60.88 0.63 100.0 SNHG21-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 14932.00 94.67 16.67 100.0 SNORD11B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 7973.00 83.03 8.90 100.0 SNORD91B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 29666.00 61.45 33.13 65.84 SNORD91A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 1001.00 43.69 1.12 93.99 MIR486-1-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 108713.00 47.55 121.40 68.59 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 1363.00 0.60 1.52 100.0 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 2394.00 1.05 2.67 100.0 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 44092.00 19.29 49.24 79.03 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 2668.00 13.56 2.98 60.13 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 3049.52 15.50 3.41 62.92 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)