ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 56364.52 44.27 62.94 59.48 RPL17-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 41707.69 32.76 46.57 42.59 RPL17-214 retained intron hepatocyte (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 67.00 0.00 0.07 100.0 SNORD43-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 2414211.00 99.49 2695.95 99.89 SNORD43-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 242.00 0.01 0.27 100.0 SNORD43-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 224.00 52.71 0.25 100.0 MIR151B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 135.00 0.65 0.15 100.0 SNORD3A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 43711.00 93.09 48.81 100.0 SNORD92-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 6350.00 46.57 7.09 100.0 NSRP1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 5630.00 41.29 6.29 89.61 NSRP1-214 protein coding hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 4159.00 36.61 4.64 100.0 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1151.00 10.13 1.29 92.15 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1181.00 10.40 1.32 77.49 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2317.00 20.40 2.59 92.57 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 738.00 6.50 0.82 63.24 MIR23AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 4427.00 51.50 4.94 100.0 MIR122HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 269.00 67.25 0.30 100.0 ODAD3-204 nonsense mediated decay hepatocyte (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 495.00 1.60 0.55 100.0 VMP1-217 retained intron hepatocyte (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 757.00 2.45 0.85 100.0 VMP1-217 retained intron hepatocyte (In vitro differentiated cells)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 20132.00 65.27 22.48 72.75 VMP1-217 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1141.00 0.05 1.27 100.0 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 1634274.81 74.61 1824.99 77.53 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 483405.11 22.07 539.82 22.37 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 12821.00 0.59 14.32 89.71 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 243.00 0.01 0.27 100.0 C19orf48P-203 retained intron hepatocyte (In vitro differentiated cells)