ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 27316.00 87.78 30.50 100.0 GNL3-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 7714.00 83.62 8.61 100.0 RPL5-205 retained intron hepatocyte (In vitro differentiated cells)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 356.00 3.86 0.40 100.0 RPL5-205 retained intron hepatocyte (In vitro differentiated cells)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 2602.00 50.14 2.91 100.0 ZBED9-AS1-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 10317.00 92.81 11.52 100.0 RPS3A-206 retained intron hepatocyte (In vitro differentiated cells)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 63836.00 98.80 71.29 100.0 COX7C-203 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 3211.00 1.62 3.59 92.3 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 533.00 0.27 0.60 100.0 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 124473.59 62.74 139.00 66.39 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 59723.26 30.10 66.69 37.36 RACK1-229 protein coding hepatocyte (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 143767.00 27.32 160.54 57.89 RACK1-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 375807.00 71.42 419.66 90.66 RACK1-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 173.00 2.60 0.19 100.0 RNA5SP486-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 2785.00 90.98 3.11 100.0 SCARNA5-201 scaRNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 189.00 0.17 0.21 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 118.00 0.10 0.13 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 70557.00 61.88 78.79 98.41 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 6552.00 5.75 7.32 96.52 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 120.00 0.11 0.13 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 644.00 0.56 0.72 55.14 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 3382.00 2.97 3.78 78.96 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 345.00 0.30 0.39 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 2251.00 1.97 2.51 66.34 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 73.00 0.06 0.08 100.0 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 805.00 0.71 0.90 82.9 RNY4-201 misc RNA hepatocyte (In vitro differentiated cells)