ENCFF964DUY

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 12228.00 94.56 13.65 95.65 MIR100-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 1568.00 94.69 1.75 100.0 MIR301A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 3778.00 29.88 4.22 60.56 MIR130A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 8734.00 69.08 9.75 81.41 MIR130A-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 26150.00 98.76 29.20 99.67 MIRLET7F2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 132.00 59.19 0.15 100.0 MIR652-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 5.00 83.33 0.01 100.0 MIR653-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 1720.00 77.30 1.92 100.0 MIR140-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 180.00 25.82 0.20 81.82 MIR106B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 136.00 19.51 0.15 100.0 MIR106B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 229606.00 48.49 256.40 97.33 SNORD83A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 234252.00 49.47 261.59 97.64 SNORD83A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 23790.00 79.44 26.57 100.0 SNORD41-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 66.00 4.66 0.07 62.86 MT-TF-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 150.00 10.59 0.17 59.76 MT-TF-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 58.00 4.10 0.06 100.0 MT-TF-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 2211.00 20.98 2.47 100.0 MT-TV-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 110.00 0.10 0.12 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 26187.00 23.73 29.24 89.62 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 117.00 0.11 0.13 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 81.00 0.07 0.09 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 17573.00 15.92 19.62 84.85 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 2618.00 2.37 2.92 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 537.00 0.49 0.60 100.0 MT-RNR2-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 1403.00 31.80 1.57 100.0 MT-TI-201 Mt tRNA hepatocyte (In vitro differentiated cells)