ENCFF853XSN

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR091JNF
Description: Part of ENCODE experiment ENCSR091JNF. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 109.00 0.28 0.33 100.0 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 3469.00 8.93 10.48 100.0 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 1562.00 4.02 4.72 100.0 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 931.00 1.26 2.81 59.64 MEG8-251 lncRNA Peyer's patch (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 69988.00 94.89 211.45 98.76 MEG8-251 lncRNA Peyer's patch (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 725.00 0.98 2.19 45.09 MEG8-251 lncRNA Peyer's patch (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 494.00 0.67 1.49 91.65 MEG8-251 lncRNA Peyer's patch (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 3.00 0.48 0.01 100.0 SNHG14-336 lncRNA Peyer's patch (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 144.00 18.07 0.44 100.0 FMN2-209 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 80.00 0.69 0.24 100.0 LINC02739-203 lncRNA Peyer's patch (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 60.00 0.52 0.18 21.98 LINC02739-203 lncRNA Peyer's patch (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 289.00 2.50 0.87 100.0 LINC02739-203 lncRNA Peyer's patch (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 3433.00 29.65 10.37 100.0 LINC02739-203 lncRNA Peyer's patch (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 683.00 5.90 2.06 100.0 LINC02739-203 lncRNA Peyer's patch (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 213.00 1.84 0.64 78.02 LINC02739-203 lncRNA Peyer's patch (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 2.00 28.57 0.01 100.0 MIR124-1HG-216 lncRNA Peyer's patch (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 919.00 21.34 2.78 100.0 SNHG10-212 lncRNA Peyer's patch (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 5831.00 53.04 17.62 100.0 MIR222HG-206 lncRNA Peyer's patch (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 2811.00 25.57 8.49 75.18 MIR222HG-206 lncRNA Peyer's patch (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 70.00 0.64 0.21 100.0 MIR222HG-206 lncRNA Peyer's patch (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 2752.00 70.95 8.31 100.0 RPSA-216 retained intron Peyer's patch (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 910.00 17.20 2.75 89.57 MIR99AHG-370 lncRNA Peyer's patch (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 3861.00 72.97 11.66 96.09 MIR99AHG-370 lncRNA Peyer's patch (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 265.00 96.72 0.80 100.0 HPS4-237 retained intron Peyer's patch (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 39.00 73.58 0.12 100.0 MEG8-253 lncRNA Peyer's patch (Tissue)