ENCFF853XSN

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR091JNF
Description: Part of ENCODE experiment ENCSR091JNF. The libraries contained in this Experiment come from tissue sub-sections of a 54 year old male's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 18979.60 45.72 57.34 57.66 RPL17-214 retained intron Peyer's patch (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 15885.62 38.27 47.99 46.65 RPL17-214 retained intron Peyer's patch (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 449646.00 99.07 1358.48 99.98 SNORD43-201 snoRNA Peyer's patch (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 22.00 0.00 0.07 100.0 SNORD43-201 snoRNA Peyer's patch (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 103.00 44.59 0.31 100.0 MIR151B-201 miRNA Peyer's patch (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 51.00 0.76 0.15 100.0 SNORD3A-201 snoRNA Peyer's patch (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2994.00 45.08 9.05 100.0 NSRP1-214 protein coding Peyer's patch (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 1894.00 28.52 5.72 69.12 NSRP1-214 protein coding Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1964.00 27.76 5.93 95.66 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 688.00 9.72 2.08 84.62 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1766.00 24.96 5.34 91.41 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1127.00 15.93 3.40 82.99 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 17.00 11.18 0.05 100.0 ODAD3-204 nonsense mediated decay Peyer's patch (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1598.00 2.24 4.83 100.0 VMP1-217 retained intron Peyer's patch (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 122.00 0.17 0.37 100.0 VMP1-217 retained intron Peyer's patch (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 47732.00 66.80 144.21 72.37 VMP1-217 retained intron Peyer's patch (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1775.00 38.49 5.36 100.0 C19orf48P-203 retained intron Peyer's patch (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 180.00 3.90 0.54 100.0 C19orf48P-203 retained intron Peyer's patch (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1139537.00 78.30 3442.79 79.62 CARMN-209 lncRNA Peyer's patch (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 1193.00 60.50 3.60 100.0 PPFIA1P1-201 processed pseudogene Peyer's patch (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 122.00 18.05 0.37 100.0 SNORD114-21-201 snoRNA Peyer's patch (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 454.00 67.16 1.37 100.0 SNORD114-21-201 snoRNA Peyer's patch (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 6614.00 97.65 19.98 100.0 MIR98-201 miRNA Peyer's patch (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 42.00 48.28 0.13 100.0 SNORD113-5-201 snoRNA Peyer's patch (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 301.00 89.32 0.91 100.0 MIR15A-201 miRNA Peyer's patch (Tissue)