ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 87.00 92.55 1.15 100.0 MIR30B-201 miRNA HT-29 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 18.00 78.26 0.24 100.0 MIR181D-201 miRNA HT-29 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 125.00 95.42 1.65 100.0 MIR215-201 miRNA HT-29 (Cell line)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 23.00 0.45 0.30 100.0 MIR181A2-201 miRNA HT-29 (Cell line)
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 5426.00 99.11 71.56 99.65 MIR191-201 miRNA HT-29 (Cell line)
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 1.00 100.00 0.01 100.0 MIR149-201 miRNA HT-29 (Cell line)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 2.00 28.57 0.03 100.0 MIR181C-201 miRNA HT-29 (Cell line)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 5.00 71.43 0.07 100.0 MIR181C-201 miRNA HT-29 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 154.00 95.65 2.03 100.0 MIR194-1-201 miRNA HT-29 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 61.00 95.31 0.80 98.39 MIR128-2-201 miRNA HT-29 (Cell line)
ENST00000384906.1 ENST00000384906.1_13_34_+ 13–34 1.00 100.00 0.01 100.0 MIR99A-201 miRNA HT-29 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 2.00 0.21 0.03 100.0 MIR28-201 miRNA HT-29 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 840.00 88.61 11.08 94.28 MIR28-201 miRNA HT-29 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 43.00 4.54 0.57 93.48 MIR28-201 miRNA HT-29 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 320.00 77.11 4.22 100.0 MIR183-201 miRNA HT-29 (Cell line)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 1199.00 96.93 15.81 98.04 MIR186-201 miRNA HT-29 (Cell line)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 2730.00 94.37 36.01 100.0 MIR200B-201 miRNA HT-29 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 1398.00 91.37 18.44 95.62 MIR181B2-201 miRNA HT-29 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 51.00 85.00 0.67 89.47 MIR10B-201 miRNA HT-29 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 12.00 9.38 0.16 100.0 MIR130B-201 miRNA HT-29 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 54.04 42.22 0.71 48.25 MIR130B-201 miRNA HT-29 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 61.06 47.70 0.81 66.37 MIR130B-201 miRNA HT-29 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 472.36 69.77 6.23 71.79 MIR93-201 miRNA HT-29 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 180.76 26.70 2.38 31.66 MIR93-201 miRNA HT-29 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 23.00 85.19 0.30 85.19 MIR532-201 miRNA HT-29 (Cell line)