ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 1.00 1.43 0.01 100.0 SNHG20-201 lncRNA HT-29 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 2.00 2.50 0.03 100.0 ATP5MK-205 protein coding HT-29 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 23.00 28.75 0.30 100.0 ATP5MK-205 protein coding HT-29 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 8.00 25.81 0.11 100.0 LINC01556-201 lncRNA HT-29 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 17.00 56.67 0.22 100.0 ATAD3A-202 protein coding HT-29 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 12.00 36.36 0.16 70.59 TMC5-202 protein coding HT-29 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 322.00 96.70 4.25 100.0 ZMYM2-203 protein coding HT-29 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 18.00 0.95 0.24 100.0 RNVU1-7-201 snRNA HT-29 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 3161.00 95.38 41.69 100.0 SNORD24-201 snoRNA HT-29 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 23.00 71.88 0.30 100.0 Y_RNA.389-201 misc RNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 7.00 0.03 0.09 100.0 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 22.00 0.09 0.29 100.0 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 2781.00 11.31 36.68 86.5 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 21184.00 86.13 279.39 98.32 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 20060.00 98.66 264.56 100.0 SNORD37-201 snoRNA HT-29 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 10460.00 75.93 137.95 95.39 SNORD59A-201 snoRNA HT-29 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 4.00 6.25 0.05 100.0 SNORA7B-201 snoRNA HT-29 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 398.00 86.52 5.25 100.0 SNORD14D-201 snoRNA HT-29 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 1.00 5.00 0.01 100.0 Y_RNA.555-201 misc RNA HT-29 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 1956.00 93.28 25.80 95.55 MIR25-201 miRNA HT-29 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 984.00 91.03 12.98 98.7 MIR99B-201 miRNA HT-29 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 36.00 52.94 0.47 70.59 MIR23B-201 miRNA HT-29 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 30.00 44.12 0.40 71.43 MIR23B-201 miRNA HT-29 (Cell line)
ENST00000384836.1 ENST00000384836.1_66_87_+ 66–87 70.00 82.35 0.92 100.0 MIR203A-201 miRNA HT-29 (Cell line)
ENST00000384849.1 ENST00000384849.1_65_85_+ 65–85 1.00 100.00 0.01 100.0 MIR199B-201 miRNA HT-29 (Cell line)