ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 9.00 0.35 0.12 100.0 SNORD38A-201 snoRNA HT-29 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 2330.00 91.34 30.73 100.0 SNORD38A-201 snoRNA HT-29 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 111.00 4.35 1.46 100.0 SNORD38A-201 snoRNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 36.00 0.70 0.47 75.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 11.00 0.21 0.15 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 100.00 1.93 1.32 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 333.00 6.43 4.39 76.03 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 417.00 8.05 5.50 60.43 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 921.00 17.79 12.15 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 510.00 9.85 6.73 82.93 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 41.00 0.79 0.54 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 127.00 2.45 1.67 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 720.00 73.17 9.50 100.0 SNORD14C-201 snoRNA HT-29 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 5.00 2.15 0.07 100.0 RNA5SP77-201 rRNA pseudogene HT-29 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 10870.00 92.17 143.36 100.0 SNORD6-201 snoRNA HT-29 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 28.00 0.24 0.37 100.0 SNORD6-201 snoRNA HT-29 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 341.00 49.35 4.50 100.0 RNY3-201 misc RNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 84.00 3.18 1.11 100.0 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 307.08 11.64 4.05 45.83 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 377.49 14.31 4.98 56.34 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 221.00 8.38 2.91 100.0 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 48.00 1.82 0.63 100.0 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 907.00 34.38 11.96 88.32 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 78.00 2.96 1.03 78.79 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 45.00 95.74 0.59 97.83 MIR146B-201 miRNA HT-29 (Cell line)