ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 132.00 46.81 1.74 97.06 RNY4P27-201 misc RNA HT-29 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 18.00 8.70 0.24 100.0 Y_RNA.136-201 misc RNA HT-29 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 13.00 43.33 0.17 100.0 Y_RNA.181-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 18.00 4.20 0.24 100.0 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 25.26 5.89 0.33 63.15 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 21.00 4.90 0.28 100.0 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 5.06 1.18 0.07 31.64 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 11.00 2.56 0.15 100.0 RNY1-201 misc RNA HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 460.31 2.19 6.07 33.19 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 154.36 0.74 2.04 50.94 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 1394.00 6.65 18.38 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 10.00 0.05 0.13 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 1618.00 7.71 21.34 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 160.69 0.77 2.12 47.54 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 265.00 1.26 3.49 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 511.00 2.44 6.74 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 83.00 0.40 1.09 100.0 RNA5SP202-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 38.00 21.23 0.50 100.0 Y_RNA.234-201 misc RNA HT-29 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 4.00 0.01 0.05 100.0 RNA5S9-201 rRNA HT-29 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 2450.00 4.79 32.31 100.0 RNA5SP141-201 rRNA pseudogene HT-29 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 89.00 83.96 1.17 100.0 ENST00000364722 snoRNA HT-29 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 768.00 79.26 10.13 100.0 SNORD52-201 snoRNA HT-29 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 314.00 24.38 4.14 31.59 SNORD117-201 snoRNA HT-29 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 755.00 58.62 9.96 70.63 SNORD117-201 snoRNA HT-29 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 6.00 0.21 0.08 100.0 RNA5SP298-201 rRNA pseudogene HT-29 (Cell line)