ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 65.00 0.59 0.86 100.0 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 1352.00 12.27 17.83 85.03 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 156.00 1.42 2.06 58.21 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 742.00 6.74 9.79 60.67 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 417.00 3.79 5.50 46.75 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 168.64 1.53 2.22 42.16 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 644.00 5.85 8.49 73.27 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 81.00 0.74 1.07 100.0 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 269.61 2.45 3.56 40.06 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 243.12 2.21 3.21 41.35 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 673.00 6.11 8.88 73.87 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 1.00 0.85 0.01 100.0 SNORD104-201 snoRNA HT-29 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 4.00 3.42 0.05 100.0 SNORD104-201 snoRNA HT-29 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 1592.00 40.78 21.00 83.44 RNA5SP358-201 rRNA pseudogene HT-29 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 34.00 0.05 0.45 85.0 RNA5SP145-201 rRNA pseudogene HT-29 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 1.00 8.33 0.01 100.0 Y_RNA.105-201 misc RNA HT-29 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 20.00 40.00 0.26 100.0 RNY4P9-201 misc RNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 157.00 5.42 2.07 25.08 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 10.00 0.34 0.13 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 16.00 0.55 0.21 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 116.00 4.00 1.53 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 105.00 3.62 1.38 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 179.00 6.17 2.36 100.0 RNU5B-1-201 snRNA HT-29 (Cell line)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 1.00 100.00 0.01 100.0 SNORD115-18-201 snoRNA HT-29 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 53.00 18.79 0.70 92.98 RNY4P27-201 misc RNA HT-29 (Cell line)