ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 156.00 0.17 2.06 83.42 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 1396.00 1.48 18.41 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 428.00 0.45 5.64 62.39 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 1319.00 1.40 17.40 98.73 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 2969.00 3.15 39.16 38.05 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 9657.00 10.23 127.36 85.1 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 5407.00 5.73 71.31 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 183.42 0.19 2.42 66.7 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 21.00 0.02 0.28 16.03 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 39.00 0.04 0.51 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 120.81 0.13 1.59 55.17 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 17.00 0.02 0.22 77.27 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 2871.00 3.04 37.86 99.41 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 6.00 11.76 0.08 100.0 Y_RNA.14-201 misc RNA HT-29 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 20.00 3.37 0.26 100.0 RNU5E-1-201 snRNA HT-29 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 4834.00 7.13 63.75 61.95 RNA5SP370-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 74.00 16.48 0.98 100.0 SNORA31-201 snoRNA HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 4031.00 5.94 53.16 74.51 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 1337.00 1.97 17.63 100.0 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 530.00 0.78 6.99 100.0 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 3288.00 4.85 43.36 66.04 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 269.61 2.45 3.56 40.06 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 243.12 2.21 3.21 41.35 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 788.00 7.15 10.39 60.34 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 486.00 4.41 6.41 71.37 RNU5A-1-201 snRNA HT-29 (Cell line)