ENCFF834CUR

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 13.00 0.00 0.17 100.0 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 53.89 0.01 0.71 45.67 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 114.66 0.02 1.51 64.06 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 75.86 0.01 1.00 29.98 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 51.00 0.01 0.67 100.0 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 9.00 81.82 0.12 100.0 ENST00000778783 lncRNA HT-29 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 11.00 68.75 0.15 84.62 MIR155HG-205 lncRNA HT-29 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 89.00 17.05 1.17 100.0 ENST00000785178 lncRNA HT-29 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 48.00 8.39 0.63 76.19 ENST00000786284 lncRNA HT-29 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 126.00 22.03 1.66 100.0 ENST00000786284 lncRNA HT-29 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 15.00 2.62 0.20 36.59 ENST00000786284 lncRNA HT-29 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 1030.00 80.85 13.58 90.51 ENST00000788343 lncRNA HT-29 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 117.87 4.02 1.55 14.75 ENST00000797550 lncRNA HT-29 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 411.44 14.04 5.43 51.49 ENST00000797550 lncRNA HT-29 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 101.00 3.45 1.33 40.73 ENST00000797550 lncRNA HT-29 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 4789.00 72.04 63.16 95.47 MIR181A1HG-212 lncRNA HT-29 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 65.00 0.98 0.86 100.0 MIR181A1HG-212 lncRNA HT-29 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 542.00 37.98 7.15 100.0 C19orf48P-218 lncRNA HT-29 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 661.00 46.32 8.72 100.0 C19orf48P-218 lncRNA HT-29 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 31.00 20.39 0.41 100.0 ENST00000817026 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 40.00 0.88 0.53 88.89 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 21.00 0.46 0.28 100.0 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 31.51 0.69 0.42 27.64 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 142.34 3.12 1.88 30.16 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 118.00 2.59 1.56 100.0 ENST00000823279 lncRNA HT-29 (Cell line)